Introduction to computational proteomics

I The basics: What is computational proteomics?

Basic notions in molecular biology

Sequence comparison

Multiple sequence alignment and partial order graphs

Motif discovery

Markov models of protein families

Classifiers and Kernels

Protein structure analysis

Protein Domains

II Putting all the pieces together: Clustering and classification

Embedding Algorithms and Vectorial Representations

Analysis of gene expression data

Protein-protein interactions

Cellular Pathways

Learning Gene Networks with Bayesian Networks.